L.A.
It is normal for children to have irregular sleep cycles around this age, it is another one of those "milestones". He is also old enough to start to attempt the "cry it out" method.
Are you putting him in his bed after he is already asleep? Often times, babies will wake up scared not knowing how they got there and not knowing how to soothe themselves back to sleep. If you can, try laying him down in his bed while he is tired but still awake, that could help him when he starts to wake throughout the night, he will
remember his surroundings.
Since he was sick and off track, it may take him a week or so to get back in his cycle. Keeping him in bed with you will only prolong the problem.